5YDP		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component B, A, C
Primary reference	Crystal structure of the TetR family repressor, AlkX, from Dietzia sp. DQ12-45-1b implicated in biodegradation of n-alkanes., Liang JL, Gao Y, He Z, Nie Y, Wang M, JiangYang JH, Zhang XC, Shu WS, Wu XL, Appl Environ Microbiol. 2017 Aug 18. pii: AEM.01447-17. doi:, 10.1128/AEM.01447-17. PMID:28821550

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (5ydp.pdb1.gz) 56 Kb Biological Unit Coordinates (5ydp.pdb2.gz) 56 Kb LPC: Ligand-Protein Contacts for 5YDP CSU: Contacts of Structural Units for 5YDP Structure Factors (307 Kb) Retrieve 5YDP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YDP from S2C, [Save to disk]

View 5YDP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ydp_A] [5ydp_B] [5ydp_C] SWISS-PROT database:

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