5YF1 Transferase date Sep 20, 2017
title Crystal Structure Of Carnmt1 Bound To Carnosine And Sfg
authors R.Cao, H.Li
compound source
Molecule: Carnosine N-Methyltransferase
Chain: A, B
Fragment: Methyltransferase Domain (Unp Residues 53-409)
Ec: 2.1.1.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Carnmt1, C9orf41
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phisgb1
symmetry Space Group: P 61 2 2
R_factor 0.168 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.125 128.125 324.643 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand
enzyme Transferase E.C.2.1.1.22 BRENDA
Primary referenceMolecular basis for histidine N1 position-specific methylation by CARNMT1., Cao R, Zhang X, Liu X, Li Y, Li H, Cell Res. 2018 Apr;28(4):494-496. doi: 10.1038/s41422-018-0003-0. Epub 2018 Feb, 20. PMID:29463897
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (5yf1.pdb1.gz) 251 Kb
  • CSU: Contacts of Structural Units for 5YF1
  • Structure Factors (1247 Kb)
  • Retrieve 5YF1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YF1 from S2C, [Save to disk]
  • View 5YF1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YF1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5yf1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yf1_B] [5yf1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YF1
  • Community annotation for 5YF1 at PDBWiki (http://pdbwiki.org)

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