5YH2	Transferase	date	Sep 27, 2017
title	The Structure Of Drfam20c1 And Hfam20a Complex
authors	H.Zhang, J.Xiao
compound		source
Molecule: Pseudokinase Fam20a Chain: A, B Fragment: Unp Residues 63-529 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fam20a, Unq9388pro34279 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
Molecule: Family With Sequence Similarity 20, Member Ca Chain: C, D Synonym: Drfam20c1 Engineered: Yes Mutation: Yes		Organism_scientific: Danio Rerio Organism_common: Zebrafish Organism_taxid: 7955 Gene: Fam20ca Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
symmetry	Space Group: P 41 21 2	R_factor 0.245 R_Free 0.298
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.059 110.059 461.698 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.55 Å
ligand	ATP	enzyme
Gene Ontology	Chain Function Process Component A, B protein serine/threonine kin... protein serine/threonine kin...
Primary reference	Structure and evolution of the Fam20 kinases., Zhang H, Zhu Q, Cui J, Wang Y, Chen MJ, Guo X, Tagliabracci VS, Dixon JE, Xiao J, Nat Commun. 2018 Mar 23;9(1):1218. doi: 10.1038/s41467-018-03615-z. PMID:29572475

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk] Biological Unit Coordinates (5yh2.pdb1.gz) 272 Kb LPC: Ligand-Protein Contacts for 5YH2 CSU: Contacts of Structural Units for 5YH2 Structure Factors (166 Kb) Retrieve 5YH2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YH2 from S2C, [Save to disk]

View 5YH2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5YH2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n5yh2, region H:124-225 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yh2_B] [5yh2_D] [5yh2_C] [5yh2_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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