5YH3 Transferase date Sep 27, 2017
title The Structure Of Hfam20c And Hfam20a Complex
authors Q.Zhu, J.Xiao
compound source
Molecule: Pseudokinase Fam20a
Chain: A, B
Fragment: Unp Residues 63-529
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fam20a, Unq9388pro34279
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Extracellular Serinethreonine Protein Kinase Fam
Chain: C, D
Fragment: Unp Residues 141-578
Synonym: Dentin Matrix Protein 4,Dmp-4,Golgi Casein Kinase, Enriched Fraction Casein Kinase,Gef-Ck;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fam20c, Dmp4
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.266
length a length b length c angle alpha angle beta angle gamma
78.469 192.747 226.669 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
enzyme Transferase E.C. BRENDA
A, B
  • protein serine/threonine kin...
  • protein serine/threonine kin...

  • Primary referenceStructure and evolution of the Fam20 kinases., Zhang H, Zhu Q, Cui J, Wang Y, Chen MJ, Guo X, Tagliabracci VS, Dixon JE, Xiao J, Nat Commun. 2018 Mar 23;9(1):1218. doi: 10.1038/s41467-018-03615-z. PMID:29572475
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (5yh3.pdb1.gz) 140 Kb
  • Biological Unit Coordinates (5yh3.pdb2.gz) 130 Kb
  • CSU: Contacts of Structural Units for 5YH3
  • Structure Factors (358 Kb)
  • Retrieve 5YH3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YH3 from S2C, [Save to disk]
  • View 5YH3 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YH3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5yh3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yh3_C] [5yh3_B] [5yh3_D] [5yh3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YH3
  • Community annotation for 5YH3 at PDBWiki (http://pdbwiki.org)

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