5YHU Transcription date Sep 30, 2017
title Crystal Structure Of The Dna-Binding Domain Of Human Myelin- Regulatory Factor
authors B.Chen, Y.Zhu, S.Ye, R.Zhang
compound source
Molecule: Myelin Regulatory Factor
Chain: A, B
Fragment: Dna-Binding Domain
Synonym: Myelin Gene Regulatory Factor
Ec: 3.4.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myrf, C11orf9, Kiaa0954, Mrf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3 2
R_factor 0.204 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
105.122 105.122 297.413 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
enzyme Hydrolase E.C.3.4 BRENDA
A, B

Primary referenceStructure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode., Chen B, Zhu Y, Ye S, Zhang R, J Struct Biol. 2018 May 2. pii: S1047-8477(18)30115-1. doi:, 10.1016/j.jsb.2018.04.007. PMID:29729323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (5yhu.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (5yhu.pdb2.gz) 93 Kb
  • CSU: Contacts of Structural Units for 5YHU
  • Structure Factors (869 Kb)
  • Retrieve 5YHU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YHU from S2C, [Save to disk]
  • View 5YHU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YHU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5yhu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yhu_A] [5yhu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YHU
  • Community annotation for 5YHU at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science