5YKE Membrane Protein date Oct 14, 2017
title Structure Of Pancreatic Atp-Sensitive Potassium Channel Boun Glibenclamide And Atpgammas (Focused Refinement On Tm At 4.
authors L.Chen, J.X.Wu
compound source
Molecule: Atp-Sensitive Inward Rectifier Potassium Channel
Chain: A, C, E, G
Synonym: Inward Rectifier K(+) Channel Kir6.2,Potassium Cha Inwardly Rectifying Subfamily J Member 11;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Kcnj11
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Atp-Binding Cassette Sub-Family C Member 8 Isofor
Chain: B, D, F, H
Synonym: Sur1
Engineered: Yes

Organism_scientific: Mesocricetus Auratus
Organism_common: Golden Hamster
Organism_taxid: 10036
Gene: Abcc8
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.11 Å
ligand GBM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G
  • ATP-activated inward rectifi...


  • F, B, H, D


    Primary referenceLigand binding and conformational changes of SUR1 subunit in pancreatic ATP-sensitive potassium channels., Wu JX, Ding D, Wang M, Kang Y, Zeng X, Chen L, Protein Cell. 2018 Mar 28. pii: 10.1007/s13238-018-0530-y. doi:, 10.1007/s13238-018-0530-y. PMID:29594720
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (645 Kb) [Save to disk]
  • Biological Unit Coordinates (5yke.pdb1.gz) 622 Kb
  • LPC: Ligand-Protein Contacts for 5YKE
  • CSU: Contacts of Structural Units for 5YKE
  • Retrieve 5YKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YKE from S2C, [Save to disk]
  • View 5YKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YKE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5yke from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yke_G] [5yke_A] [5yke_F] [5yke_D] [5yke_B] [5yke_H] [5yke_C] [5yke_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YKE
  • Community annotation for 5YKE at PDBWiki (http://pdbwiki.org)

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