5YVH Protein Transport Rna Binding Protein date Nov 25, 2017
title Crystal Structure Of Karyopherin Beta2 In Complex With Fus(3
authors T.Yoshizawa, H.Y.J.Fung, Y.M.Chook
compound source
Molecule: Transportin-1
Chain: A
Fragment: Truncated Residues 345-375 Replaced With Ggsggsg
Synonym: Importin Beta-2,Karyopherin Beta-2,M9 Region Inter Protein,Mip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnpo1, Kpnb2, Mip1, Trn
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Rna-Binding Protein Fus
Chain: B
Fragment: Arggly-Rich Domain
Synonym: 75 Kda Dna-Pairing Protein,Oncogene Fus,Oncogene T Translocated In Liposarcoma Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fus, Tls
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 2
R_factor 0.213 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.425 156.532 67.822 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceNuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites., Yoshizawa T, Ali R, Jiou J, Fung HYJ, Burke KA, Kim SJ, Lin Y, Peeples WB, Saltzberg D, Soniat M, Baumhardt JM, Oldenbourg R, Sali A, Fawzi NL, Rosen MK, Chook YM, Cell. 2018 Apr 19;173(3):693-705.e22. doi: 10.1016/j.cell.2018.03.003. PMID:29677513
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (5yvh.pdb1.gz) 281 Kb
  • CSU: Contacts of Structural Units for 5YVH
  • Structure Factors (309 Kb)
  • Retrieve 5YVH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YVH from S2C, [Save to disk]
  • View 5YVH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YVH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yvh_A] [5yvh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YVH
  • Community annotation for 5YVH at PDBWiki (http://pdbwiki.org)

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