5Z00	Transcription Dna	date	Dec 17, 2017
title	Atval1 B3 Domain In Complex With 15bp-Dna
authors	B.X.Wu, M.M.Zhang
compound		source
Molecule: Dna (5'-D(Apaptptpcptpgpcpaptpgpgpap 3'); Chain: A, E, I Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Tpapaptpcpcpaptpgpcpapgpap 3'); Chain: B, J Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: B3 Domain-Containing Transcription Repressor Val1 Chain: C, G, K, M Fragment: B3 Domain, Dna Binding Domain Synonym: Protein High-Level Expression Of Sugar-Inducible 2 Vp1abi3-Like 1; Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Val1, Hsi2, At2g30470, T6b20.17 Expression_system: Arabidopsis Thaliana Expression_system_taxid: 3702
Molecule: Dna (5'-D(Tpapaptpcpcpaptpgpcpapgpap 3'); Chain: F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.216 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.223 97.416 71.149 90.00 110.19 90.00
method	X-Ray Diffraction	resolution	2.59 Å
Gene Ontology	Chain Function Process Component M, C, K, G
Primary reference	Structural insight into the role of VAL1 B3 domain for targeting to FLC locus in Arabidopsis thaliana., Wu B, Zhang M, Su S, Liu H, Gan J, Ma J, Biochem Biophys Res Commun. 2018 Jun 22;501(2):415-422. doi:, 10.1016/j.bbrc.2018.05.002. Epub 2018 May 10. PMID:29733847

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (5z00.pdb1.gz) 106 Kb CSU: Contacts of Structural Units for 5Z00 Structure Factors (193 Kb) Retrieve 5Z00 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5Z00 from S2C, [Save to disk]

View 5Z00 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5Z00

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5z00_I] [5z00_C] [5z00_E] [5z00_F] [5z00_B] [5z00_A] [5z00_G] [5z00_M] [5z00_K] [5z00_J] SWISS-PROT database: Domain organization of by SWISSPFAM

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