5Z6Q Hydrolase date Jan 25, 2018
title Crystal Structure Of Aaa Of Spastin
authors Z.Lin, C.Wang, Y.Shen
compound source
Molecule: Spastin
Chain: A
Fragment: Unp Residues 229-616
Synonym: Spastic Paraplegia 4 Protein
Ec: 3.6.4.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spast, Adpsp, Fsp2, Kiaa1083, Spg4
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 65
R_factor 0.194 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.520 90.520 89.153 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand CL enzyme Hydrolase E.C.3.6.4.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe AAA protein spastin possesses two levels of basal ATPase activity., Fan X, Lin Z, Fan G, Lu J, Hou Y, Habai G, Sun L, Yu P, Shen Y, Wen M, Wang C, FEBS Lett. 2018 May;592(10):1625-1633. doi: 10.1002/1873-3468.13075. Epub 2018, May 15. PMID:29710391
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5z6q.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 5Z6Q
  • CSU: Contacts of Structural Units for 5Z6Q
  • Structure Factors (118 Kb)
  • Retrieve 5Z6Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z6Q from S2C, [Save to disk]
  • View 5Z6Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Z6Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z6q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Z6Q
  • Community annotation for 5Z6Q at PDBWiki (http://pdbwiki.org)

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