5Z7D Immune System date Jan 28, 2018
title P204hinab-Dsdna Complex Structure
authors T.Jin, J.Jiang, T.S.Xiao
compound source
Molecule: Interferon-Activable Protein 204
Chain: A, B, C
Fragment: Unp Residues 216-619
Synonym: Ifi-204,Interferon-Inducible Protein P204
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ifi204
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Pcpcpaptpcpapgpapapapgpapgpapgpc)-3');
Chain: I, K
Engineered: Yes
Synthetic: Yes
Organism_scientific: Vaccinia Virus
Organism_taxid: 10245

Molecule: Dna (5'- D(Pcpcpaptpcpapgpapapapgpapgpapgpc)-3');
Chain: J, L
Engineered: Yes
Synthetic: Yes
Organism_scientific: Vaccinia Virus
Organism_taxid: 10245
symmetry Space Group: P 65 2 2
R_factor 0.260 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.390 101.390 783.610 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (5z7d.pdb1.gz) 215 Kb
  • CSU: Contacts of Structural Units for 5Z7D
  • Structure Factors (141 Kb)
  • Retrieve 5Z7D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z7D from S2C, [Save to disk]
    • View 5Z7D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Z7D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z7d_A] [5z7d_J] [5z7d_C] [5z7d_K] [5z7d_I] [5z7d_B] [5z7d_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Z7D
  • Community annotation for 5Z7D at PDBWiki (http://pdbwiki.org)

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