5ZE3 Oxidoreductase date Feb 25, 2018
title Crystal Structure Of Human Lysyl Oxidase-Like 2 (Hloxl2) In Precursor State
authors X.Zhang, M.Liu
compound source
Molecule: Lysyl Oxidase Homolog 2
Chain: A, B
Synonym: Lysyl Oxidase-Like Protein 2,Lysyl Oxidase-Related 2,Lysyl Oxidase-Related Protein Ws9-14;
Ec: 1.4.3.13
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Loxl2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.095 61.487 137.883 90.00 102.33 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA, NAG, SO4, ZN enzyme Oxidoreductase E.C.1.4.3.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human lysyl oxidase-like 2 (hLOXL2) in a precursor state., Zhang X, Wang Q, Wu J, Wang J, Shi Y, Liu M, Proc Natl Acad Sci U S A. 2018 Mar 26. pii: 1720859115. doi:, 10.1073/pnas.1720859115. PMID:29581294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (5ze3.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (5ze3.pdb2.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 5ZE3
  • CSU: Contacts of Structural Units for 5ZE3
  • Structure Factors (753 Kb)
  • Retrieve 5ZE3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZE3 from S2C, [Save to disk]
    • View 5ZE3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZE3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ze3_A] [5ze3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZE3
  • Community annotation for 5ZE3 at PDBWiki (http://pdbwiki.org)

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