5ZGN Toxin date Mar 09, 2018
title The Crystal Structure Of Kacta-Dna Complex
authors H.L.Qian, Q.Q.Yao, J.H.Gan, H.Y.Ou
compound source
Molecule: Kaca
Chain: A, B, D, E
Engineered: Yes
Other_details: Kaca
 Organism_scientific: Klebsiella Pneumoniae Subsp. Pneumonia Hs11286;
Organism_taxid: 1125630
Strain: Hs11286
Gene: Kphs_05880
Expression_system: Escherichia Coli-Thermus Thermophilus Sh Vector Ptrh1t;
Expression_system_taxid: 1085940

Molecule: Kact
Chain: C, F
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae Subsp. Pneumonia Hs11286;
Organism_taxid: 1125630
Strain: Hs11286
Gene: Kphs_05890
Expression_system: Escherichia Coli-Thermus Thermophilus Sh Vector Ptrh1t;
Expression_system_taxid: 1085940

Molecule: Dna (27-Mer)
Chain: G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (27-Mer)
Chain: H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor 0.214 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.046 62.044 61.994 93.83 93.99 93.93
method X-Ray Diffractionresolution 2.24 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


F, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (5zgn.pdb1.gz) 252 Kb
  • LPC: Ligand-Protein Contacts for 5ZGN
  • CSU: Contacts of Structural Units for 5ZGN
  • Structure Factors (865 Kb)
  • Retrieve 5ZGN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZGN from S2C, [Save to disk]
    • View 5ZGN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZGN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zgn_G] [5zgn_B] [5zgn_C] [5zgn_H] [5zgn_D] [5zgn_E] [5zgn_A] [5zgn_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZGN
  • Community annotation for 5ZGN at PDBWiki (http://pdbwiki.org)

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