5ZHX Oncoprotein date Mar 13, 2018
title Crystal Structure Of Smggds-558 And Farnesylated Rhoa Comple
authors H.Shimizu, S.Toma-Fukai, T.Shimizu
compound source
Molecule: Rap1 Gtpase-Gdp Dissociation Stimulator 1
Chain: A, B, C, D
Synonym: Exchange Factor Smggds,Smg Gds Protein,Smg P21 Sti Gdpgtp Exchange Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rap1gds1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transforming Protein Rhoa
Chain: e, f, g, h
Synonym: Rho Cdna Clone 12,H12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhoa, Arh12, Arha, Rho12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.250 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.320 181.770 205.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand FAR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


e, h, g, f


Primary referenceGEF mechanism revealed by the structure of SmgGDS-558 and farnesylated RhoA complex and its implication for a chaperone mechanism., Shimizu H, Toma-Fukai S, Kontani K, Katada T, Shimizu T, Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):9563-9568. doi:, 10.1073/pnas.1804740115. Epub 2018 Sep 6. PMID:30190425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (391 Kb) [Save to disk]
  • Biological Unit Coordinates (5zhx.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (5zhx.pdb2.gz) 99 Kb
  • Biological Unit Coordinates (5zhx.pdb3.gz) 99 Kb
  • Biological Unit Coordinates (5zhx.pdb4.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 5ZHX
  • CSU: Contacts of Structural Units for 5ZHX
  • Structure Factors (1320 Kb)
  • Retrieve 5ZHX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZHX from S2C, [Save to disk]
    • View 5ZHX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZHX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zhx_e] [5zhx_h] [5zhx_D] [5zhx_f] [5zhx_A] [5zhx_B] [5zhx_C] [5zhx_g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZHX
  • Community annotation for 5ZHX at PDBWiki (http://pdbwiki.org)

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