5ZIB	Sugar Binding Protein	date	Mar 14, 2018
title	Crystal Structure Of Human Gnt-V Luminal Domain In Apo Form
authors	M.Nagae, Y.Yamaguchi
compound		source
Molecule: Alpha-1,6-Mannosylglycoprotein 6-Beta-N- Acetylglucosaminyltransferase A; Chain: A Synonym: Alpha-Mannoside Beta-1,6-N-Acetylglucosaminyltrans Glcnac-T V,Gnt-V,Mannoside Acetylglucosaminyltransferase 5, Acetylglucosaminyl-Transferase V; Ec: 2.4.1.155 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mgat5, Ggnt5 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Expi293 Expression_system_atcc_number: Crl-1573 Expression_system_plasmid: Psec-Npa
symmetry	Space Group: P 65 2 2	R_factor 0.189 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.671 97.671 268.856 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	NAG	enzyme	Transferase E.C.2.4.1.155 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V., Nagae M, Kizuka Y, Mihara E, Kitago Y, Hanashima S, Ito Y, Takagi J, Taniguchi N, Yamaguchi Y, Nat Commun. 2018 Aug 23;9(1):3380. doi: 10.1038/s41467-018-05931-w. PMID:30140003

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (5zib.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 5ZIB CSU: Contacts of Structural Units for 5ZIB Structure Factors (1329 Kb) Retrieve 5ZIB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ZIB from S2C, [Save to disk]

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Visual 3D analysis of 5ZIB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5zib_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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