5ZOK Dna Binding Protein date Apr 13, 2018
title Crystal Structure Of Human Smad1-Man1 Complex.
authors K.Miyazono, T.Ito, M.Tanokura
compound source
Molecule: Mothers Against Decapentaplegic Homolog 1
Chain: A, C
Fragment: Unp Residues 259-462
Synonym: Mothers Against Dpp Homolog 1,Jv4-1,Mad-Related Pr Smad Family Member 1,Hsmad1,Transforming Growth Factor-Beta Protein 1,Bsp-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smad1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inner Nuclear Membrane Protein Man1
Chain: B, D
Fragment: Unp Residues 762-890
Synonym: Lem Domain-Containing Protein 3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Man1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 3 2
R_factor 0.215 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.050 187.050 187.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural basis for receptor-regulated SMAD recognition by MAN1., Miyazono KI, Ohno Y, Wada H, Ito T, Fukatsu Y, Kurisaki A, Asashima M, Tanokura M, Nucleic Acids Res. 2018 Oct 13. pii: 5128924. doi: 10.1093/nar/gky925. PMID:30321401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (5zok.pdb1.gz) 334 Kb
  • Biological Unit Coordinates (5zok.pdb2.gz) 331 Kb
  • CSU: Contacts of Structural Units for 5ZOK
  • Structure Factors (722 Kb)
  • Retrieve 5ZOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZOK from S2C, [Save to disk]
  • View 5ZOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZOK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zok from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zok_D] [5zok_B] [5zok_A] [5zok_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZOK
  • Community annotation for 5ZOK at PDBWiki (http://pdbwiki.org)

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