5ZQY Hydrolase date Apr 20, 2018
title Crystal Structure Of A Poly(Adp-Ribose) Glycohydrolase
authors M.Wang, Z.Yuan, Y.Ma, J.Wang, X.Liu
compound source
Molecule: Poly(Adp-Ribose) Glycohydrolase Arh3
Chain: A
Synonym: Adp-Ribosylhydrolase 3,[Protein Adp-Ribosylarginin Hydrolase-Like Protein 2;
Ec: 3.2.1.143
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adprhl2, Arh3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.880 76.740 48.530 90.00 103.00 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand AR6, MG enzyme Hydrolase E.C.3.2.1.143 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-function analyses reveal the mechanism of the ARH3-dependent hydrolysis of ADP-ribosylation., Wang M, Yuan Z, Xie R, Ma Y, Liu X, Yu X, J Biol Chem. 2018 Jul 25. pii: RA118.004284. doi: 10.1074/jbc.RA118.004284. PMID:30045870
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (5zqy.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 5ZQY
  • CSU: Contacts of Structural Units for 5ZQY
  • Structure Factors (363 Kb)
  • Retrieve 5ZQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZQY from S2C, [Save to disk]
  • View 5ZQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZQY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zqy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZQY
  • Community annotation for 5ZQY at PDBWiki (http://pdbwiki.org)

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