5ZYT Dna Binding Protein date May 28, 2018
title Crystal Structure Of Human Mgme1 With 3' Overhang Double Str
authors C.Yang, J.Gan
compound source
Molecule: Mitochondrial Genome Maintenance Exonuclease 1
Chain: A, B, C, D
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mgme1, C20orf72, Ddk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Pcptptpcptptpcpc)-3')
Chain: E, F, G, H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644
symmetry Space Group: C 1 2 1
R_factor 0.250 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.497 77.489 164.714 90.00 112.40 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nuclease activity
  • exonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]
  • Biological Unit Coordinates (5zyt.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (5zyt.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (5zyt.pdb3.gz) 87 Kb
  • Biological Unit Coordinates (5zyt.pdb4.gz) 81 Kb
  • CSU: Contacts of Structural Units for 5ZYT
  • Structure Factors (1673 Kb)
  • Retrieve 5ZYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZYT from S2C, [Save to disk]
    • View 5ZYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZYT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zyt_B] [5zyt_G] [5zyt_H] [5zyt_F] [5zyt_D] [5zyt_C] [5zyt_A] [5zyt_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZYT
  • Community annotation for 5ZYT at PDBWiki (http://pdbwiki.org)

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