5AMN	Transferase	date	Mar 11, 2015
title	The Discovery Of 2-Substituted Phenol Quinazolines As Potent Selective Ret Kinase Inhibitors
authors	R.Newton, K.Bowler, E.M.Burns, P.Chapman, E.Fairweather, S.Fritzl K.Goldberg, N.M.Hamilton, S.V.Holt, G.V.Hopkins, S.D.Jones, A.M. A.Lyons, N.Q.Mcdonald, L.A.Maguire, D.P.Mould, A.G.Purkiss, H.F. A.Stowell, G.J.Thomson, I.D.Waddell, B.Waszkowycz, A.J.Watson, D.J.Ogilvie
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Receptor R Chain: A Fragment: Kinase Domain, Residues 705-826,841-1012 Synonym: Cadherin Family Member 12, Proto-Oncogene C-Ret Ec: 2.7.10.1 Engineered: Yes Other_details: Phosphorylation At Y900 And Y905		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 43 21 2	R_factor 0.183 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.570 50.570 242.840 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.57 Å
ligand	DTQ, FMT, PTR	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The discovery of 2-substituted phenol quinazolines as potent RET kinase inhibitors with improved KDR selectivity., Newton R, Bowler KA, Burns EM, Chapman PJ, Fairweather EE, Fritzl SJ, Goldberg KM, Hamilton NM, Holt SV, Hopkins GV, Jones SD, Jordan AM, Lyons AJ, Nikki March H, McDonald NQ, Maguire LA, Mould DP, Purkiss AG, Small HF, Stowell AI, Thomson GJ, Waddell ID, Waszkowycz B, Watson AJ, Ogilvie DJ, Eur J Med Chem. 2016 Jan 29;112:20-32. doi: 10.1016/j.ejmech.2016.01.039. PMID:26874741

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (5amn.pdb1.gz) 188 Kb LPC: Ligand-Protein Contacts for 5AMN CSU: Contacts of Structural Units for 5AMN Structure Factors (187 Kb) Retrieve 5AMN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AMN from S2C, [Save to disk] Re-refined 5amn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AMN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AMN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5amn] [5amn_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5AMN: [TyrKc ] by SMART

Other resources with information on 5AMN

Community annotation for 5AMN at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---