5AMN Transferase date Mar 11, 2015
title The Discovery Of 2-Substituted Phenol Quinazolines As Potent Selective Ret Kinase Inhibitors
authors R.Newton, K.Bowler, E.M.Burns, P.Chapman, E.Fairweather, S.Fritzl K.Goldberg, N.M.Hamilton, S.V.Holt, G.V.Hopkins, S.D.Jones, A.M. A.Lyons, N.Q.Mcdonald, L.A.Maguire, D.P.Mould, A.G.Purkiss, H.F. A.Stowell, G.J.Thomson, I.D.Waddell, B.Waszkowycz, A.J.Watson, D.J.Ogilvie
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Receptor R
Chain: A
Fragment: Kinase Domain, Residues 705-826,841-1012
Synonym: Cadherin Family Member 12, Proto-Oncogene C-Ret
Engineered: Yes
Other_details: Phosphorylation At Y900 And Y905
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 43 21 2
R_factor 0.183 R_Free 0.237
length a length b length c angle alpha angle beta angle gamma
50.570 50.570 242.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.57 Å
ligand DTQ, FMT, PTR enzyme Transferase E.C. BRENDA

Primary referenceThe discovery of 2-substituted phenol quinazolines as potent RET kinase inhibitors with improved KDR selectivity., Newton R, Bowler KA, Burns EM, Chapman PJ, Fairweather EE, Fritzl SJ, Goldberg KM, Hamilton NM, Holt SV, Hopkins GV, Jones SD, Jordan AM, Lyons AJ, Nikki March H, McDonald NQ, Maguire LA, Mould DP, Purkiss AG, Small HF, Stowell AI, Thomson GJ, Waddell ID, Waszkowycz B, Watson AJ, Ogilvie DJ, Eur J Med Chem. 2016 Jan 29;112:20-32. doi: 10.1016/j.ejmech.2016.01.039. PMID:26874741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5amn.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 5AMN
  • CSU: Contacts of Structural Units for 5AMN
  • Structure Factors (187 Kb)
  • Retrieve 5AMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AMN from S2C, [Save to disk]
  • Re-refined 5amn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AMN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5amn] [5amn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AMN: [TyrKc ] by SMART
  • Other resources with information on 5AMN
  • Community annotation for 5AMN at PDBWiki (http://pdbwiki.org)

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