5DTE Transport Protein date Sep 18, 2015
title Crystal Structure Of An Abc Transporter Periplasmic Solute B Protein (Ipr025997) From Actinobacillus Succinogenes 130z(A Target Efi-511065) With Bound D-Allose
authors U.Yadava, M.W.Vetting, N.F.Al Obaidi, R.Toro, L.L.Morisco, J.Bena J.Koss, S.R.Wasserman, J.D.Attonito, A.Scott Glenn, S.Chamala, S.Chowdhury, J.Lafleur, J.Love, R.D.Seidel, K.L.Whalen, J.A.Gerl S.C.Almo, Enzyme Function Initiative (Efi)
compound source
Molecule: Monosaccharide-Transporting Atpase
Chain: A, B, C, D
Fragment: Solute Binding Protein
Ec: 3.6.3.17
Engineered: Yes
Organism_scientific: Actinobacillus Succinogenes (Strain At 130z);
Organism_taxid: 339671
Strain: Atcc 55618 130z
Gene: Asuc_0081
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1
R_factor 0.164 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.190 63.218 71.201 101.13 103.29 91.35
method X-Ray Diffractionresolution 2.70 Å
ligand ALL enzyme Hydrolase E.C.3.6.3.17 BRENDA
Gene ASUC
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • monosaccharide-transporting ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (351 Kb) [Save to disk]
  • Biological Unit Coordinates (5dte.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (5dte.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (5dte.pdb3.gz) 87 Kb
  • Biological Unit Coordinates (5dte.pdb4.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 5DTE
  • CSU: Contacts of Structural Units for 5DTE
  • Structure Factors (942 Kb)
  • Retrieve 5DTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DTE from S2C, [Save to disk]
  • Re-refined 5dte structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DTE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dte_A] [5dte_C] [5dte_D] [5dte_B] [5dte]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DTE
  • Community annotation for 5DTE at PDBWiki (http://pdbwiki.org)

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