5HVL Transferase date Jan 28, 2016
title Structure Of Candida Albicans Trehalose-6-Phosphate Synthase Complex With Udp And Validoxylamine A
authors Y.Miao, R.G.Brennan
compound source
Molecule: Alpha,Alpha-Trehalose-Phosphate Synthase [Udp-For
Chain: A, B
Synonym: Trehalose-6-Phosphate Synthase,Udp-Glucose-Glucose Glucosyltransferase;
Engineered: Yes
Organism_scientific: Candida Albicans (Strain Sc5314 Atcc 2876);
Organism_common: Yeast
Organism_taxid: 237561
Strain: Sc5314 Atcc Mya-2876
Gene: Tps1, Cao19.13961, Cao19.6640
Expression_system: Escherichia Coli
Expression_system_taxid: 866768
Expression_system_strain: Bl21-Gold(De3)Plyss Ag
symmetry Space Group: P 65 2 2
R_factor 0.179 R_Free 0.206
length a length b length c angle alpha angle beta angle gamma
115.563 115.563 282.690 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4, UDP, VDM enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructural and In Vivo Studies on Trehalose-6-Phosphate Synthase from Pathogenic Fungi Provide Insights into Its Catalytic Mechanism, Biological Necessity, and Potential for Novel Antifungal Drug Design., Miao Y, Tenor JL, Toffaletti DL, Maskarinec SA, Liu J, Lee RE, Perfect JR, Brennan RG, MBio. 2017 Jul 25;8(4). pii: e00643-17. doi: 10.1128/mBio.00643-17. PMID:28743811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (5hvl.pdb1.gz) 170 Kb
  • Biological Unit Coordinates (5hvl.pdb2.gz) 170 Kb
  • Biological Unit Coordinates (5hvl.pdb3.gz) 335 Kb
  • LPC: Ligand-Protein Contacts for 5HVL
  • CSU: Contacts of Structural Units for 5HVL
  • Structure Factors (915 Kb)
  • Retrieve 5HVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HVL from S2C, [Save to disk]
  • Re-refined 5hvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HVL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hvl] [5hvl_B] [5hvl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HVL
  • Community annotation for 5HVL at PDBWiki (http://pdbwiki.org)

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