5TBC PRECATALYTIC TERNARY COMPLEX OF HUMAN DNA POLYMERASE BETA WITH GAPPED DNA SUBSTRATE, INCORPORATED (-)3TC-MP AND AN ANOTHER INCOMING (-)3TC-TP NUCLEOTIDE. date
authors Vyas, R., Suo, Z.
compound source
symmetry
R_factor
R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand 1RZ, 42E, CL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase., Reed AJ, Vyas R, Raper AT, Suo Z, J Am Chem Soc. 2017 Jan 11;139(1):465-471. doi: 10.1021/jacs.6b11258. Epub 2016, Dec 27. PMID:27959534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5tbc.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 5TBC
  • CSU: Contacts of Structural Units for 5TBC
  • Structure Factors (2285 Kb)
  • Retrieve 5TBC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TBC from S2C, [Save to disk]
  • Re-refined 5tbc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TBC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TBC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tbc_P] [5tbc_T] [5tbc_A] [5tbc_D] [5tbc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TBC
  • Community annotation for 5TBC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science