6A96 Membrane Protein date Jul 11, 2018
title Cryo-Em Structure Of The Human Alpha5beta3 Gabaa Receptor In With Gaba And Nb25
authors S.Liu, L.Xu, F.Guan, Y.T.Liu, Y.Cui, Q.Zhang, G.Q.Bi, Z.H.Zhou, X.Zh
compound source
Molecule: Nb25
Chain: K, L, O
Engineered: Yes
Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gamma-Aminobutyric Acid Receptor Subunit Beta-3,G Aminobutyric Acid Receptor Subunit Beta-3;
Chain: B, E, C, D
Synonym: Gaba(A) Receptor Subunit Beta-3,Gaba(A) Receptor S Beta-3;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabrb3
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Gamma-Aminobutyric Acid Receptor Subunit Alpha-5, Aminobutyric Acid Receptor Subunit Alpha-5;
Chain: A
Synonym: Gaba(A) Receptor Subunit Alpha-5,Gaba(A) Receptor Alpha-5;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabra5
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.51 Å
ligand ABU, BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


D, C, E, B


Primary referenceCryo-EM structure of the human alpha5beta3 GABAA receptor., Liu S, Xu L, Guan F, Liu YT, Cui Y, Zhang Q, Zheng X, Bi GQ, Zhou ZH, Zhang X, Ye S, Cell Res. 2018 Sep;28(9):958-961. doi: 10.1038/s41422-018-0077-8. Epub 2018 Aug, 23. PMID:30140029
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk]
  • Biological Unit Coordinates (6a96.pdb1.gz) 303 Kb
  • LPC: Ligand-Protein Contacts for 6A96
  • CSU: Contacts of Structural Units for 6A96
  • Retrieve 6A96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A96 from S2C, [Save to disk]
  • View 6A96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A96
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a96_E] [6a96_C] [6a96_K] [6a96_D] [6a96_A] [6a96_O] [6a96_B] [6a96_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A96
  • Community annotation for 6A96 at PDBWiki (http://pdbwiki.org)

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