6ADR Virus date Aug 02, 2018
title Anthrax Toxin Receptor 1-Bound The Seneca Valley Virus In Ne Conditions
authors Z.Y.Lou, L.Cao
compound source
Molecule: Vp1
Chain: A
 Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Vp3
Chain: C
Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Vp2
Chain: B
Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Vp4
Chain: D
Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Anthrax Toxin Receptor 1
Chain: R
Fragment: Unp Residues 38-220
Synonym: Tumor Endothelial Marker 8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Antxr1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.38 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, B


D


R


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (6adr.pdb1.gz) 8240 Kb
  • LPC: Ligand-Protein Contacts for 6ADR
  • CSU: Contacts of Structural Units for 6ADR
  • Retrieve 6ADR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ADR from S2C, [Save to disk]
    • View 6ADR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ADR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6adr_A] [6adr_D] [6adr_B] [6adr_C] [6adr_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ADR
  • Community annotation for 6ADR at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science