6AEB Dna Binding Protein Rna date Aug 04, 2018
title Crystal Structure Of Xcas9 In Complex With Sgrna And Target Pam)
authors M.Guo, K.Ren, Y.Zhu, Z.Huang
compound source
Molecule: Rna (95-Mer)
Chain: A, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314

Molecule: Dna (25-Mer)
Chain: C, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314

Molecule: Dna (5'-D(Apapapapapgptpaptptpg)-3')
Chain: D, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314

Molecule: Dna Nuclease
Chain: B, F
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.231 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
361.853 71.130 198.320 90.00 101.75 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, B
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceStructural insights into a high fidelity variant of SpCas9., Guo M, Ren K, Zhu Y, Tang Z, Wang Y, Zhang B, Huang Z, Cell Res. 2019 Mar;29(3):183-192. doi: 10.1038/s41422-018-0131-6. Epub 2019 Jan, 21. PMID:30664728
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (539 Kb) [Save to disk]
  • Biological Unit Coordinates (6aeb.pdb1.gz) 269 Kb
  • Biological Unit Coordinates (6aeb.pdb2.gz) 269 Kb
  • CSU: Contacts of Structural Units for 6AEB
  • Structure Factors (2622 Kb)
  • Retrieve 6AEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AEB from S2C, [Save to disk]
  • View 6AEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AEB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6aeb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6aeb_A] [6aeb_B] [6aeb_D] [6aeb_C] [6aeb_E] [6aeb_G] [6aeb_H] [6aeb_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AEB
  • Community annotation for 6AEB at PDBWiki (http://pdbwiki.org)

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