6AVF	Immune System	date	Sep 02, 2017
title	Crystal Structure Of The Kfj5 Tcr-Ny-Eso-1-Hla-B07:02 Compl
authors	B.S.Gully, S.Gras, J.Rossjohn
compound		source
Molecule: Beta-2-Microglobulin Chain: M Fragment: Unp Residues 13-119 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: T-Cell Receptor Alpha Variable 4,Tcr Alpha Chain Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Trav4 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: T-Cell Receptor Beta Variable 28,Tcr Beta Chain Chain: B Synonym: V_segment Translation Product Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tcrbv3s1, Trbv28 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ala-Pro-Arg-Gly-Pro-His-Gly-Gly-Ala-Ala-Ser-Gly-L Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Hla Class I Histocompatibility Antigen, B-7 Alpha Chain: H Synonym: Mhc Class I Antigen B7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-B, Hlab Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.204 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.366 67.679 105.716 90.00 102.93 90.00
method	X-Ray Diffraction	resolution	2.03 Å
Gene Ontology	Chain Function Process Component H M cellular response to iron io...
Primary reference	Divergent T-cell receptor recognition modes of a HLA-I restricted extended tumour-associated peptide., Chan KF, Gully BS, Gras S, Beringer DX, Kjer-Nielsen L, Cebon J, McCluskey J, Chen W, Rossjohn J, Nat Commun. 2018 Mar 12;9(1):1026. doi: 10.1038/s41467-018-03321-w. PMID:29531227

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk] Biological Unit Coordinates (6avf.pdb1.gz) 297 Kb CSU: Contacts of Structural Units for 6AVF Structure Factors (2098 Kb) Retrieve 6AVF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6AVF from S2C, [Save to disk]

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Visual 3D analysis of 6AVF

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6avf_M] [6avf_B] [6avf_P] [6avf_H] [6avf_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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