6B4F Transport Protein date Sep 26, 2017
title Crystal Structure Of Human Gle1 Ctd-Nup42 Gbm Complex
authors D.H.Lin, A.R.Correia, S.W.Cai, F.M.Huber, C.A.Jette, A.Hoelz
compound source
Molecule: Nucleoporin Gle1
Chain: B, A
Synonym: Hgle1,Gle1-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gle1, Gle1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nucleoporin Like 2
Chain: C, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nupl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.245 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.660 69.710 93.570 90.00 90.66 90.00
method X-Ray Diffractionresolution 2.81 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional analysis of mRNA export regulation by the nuclear pore complex., Lin DH, Correia AR, Cai SW, Huber FM, Jette CA, Hoelz A, Nat Commun. 2018 Jun 13;9(1):2319. doi: 10.1038/s41467-018-04459-3. PMID:29899397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (6b4f.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (6b4f.pdb2.gz) 116 Kb
  • CSU: Contacts of Structural Units for 6B4F
  • Structure Factors (244 Kb)
  • Retrieve 6B4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B4F from S2C, [Save to disk]
  • View 6B4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6B4F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6b4f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b4f_C] [6b4f_A] [6b4f_D] [6b4f_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6B4F
  • Community annotation for 6B4F at PDBWiki (http://pdbwiki.org)

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