6B4I Transport Protein date Sep 26, 2017
title Crystal Structure Of Human Gle1 Ctd-Nup42 Gbm-Ddx19b(Adp) Co
authors D.H.Lin, A.R.Correia, S.W.Cai, F.M.Huber, C.A.Jette, A.Hoelz
compound source
Molecule: Nucleoporin Gle1
Chain: B, A
Synonym: Hgle1,Gle1-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gle1, Gle1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nucleoporin Like 2
Chain: C, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nupl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp-Dependent Rna Helicase Ddx19b
Chain: E, F
Synonym: Dead Box Rna Helicase Dead5,Dead Box Protein 19b
Ec: 3.6.4.13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddx19b, Dbp5, Ddx19, Tdbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.234 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.740 74.650 146.830 90.00 94.85 90.00
method X-Ray Diffractionresolution 3.62 Å
ligand
enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, E


Primary referenceStructural and functional analysis of mRNA export regulation by the nuclear pore complex., Lin DH, Correia AR, Cai SW, Huber FM, Jette CA, Hoelz A, Nat Commun. 2018 Jun 13;9(1):2319. doi: 10.1038/s41467-018-04459-3. PMID:29899397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk]
  • Biological Unit Coordinates (6b4i.pdb1.gz) 254 Kb
  • Biological Unit Coordinates (6b4i.pdb2.gz) 252 Kb
  • CSU: Contacts of Structural Units for 6B4I
  • Structure Factors (141 Kb)
  • Retrieve 6B4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B4I from S2C, [Save to disk]
  • View 6B4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6B4I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6b4i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b4i_E] [6b4i_B] [6b4i_D] [6b4i_A] [6b4i_C] [6b4i_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6B4I
  • Community annotation for 6B4I at PDBWiki (http://pdbwiki.org)

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