6BBO	Hydrolase Rna	date	Oct 19, 2017
title	Crystal Structure Of Human Apobec3hrna Complex
authors	N.M.Shaban, K.Shi, S.Banerjee, R.S.Harris, H.Aihara
compound		source
Molecule: Apobec3h Chain: A, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apobec3h Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (5'-R(Upapapapapapapa)-3') Chain: B, F		Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: Rna (5'-R(Upupupupupupupu)-3') Chain: C, G		Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: Mcherry Fluorescent Protein Chain: D, H Engineered: Yes		Organism_scientific: Discosoma Sp. Organism_taxid: 86600 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31 1 2	R_factor 0.364 R_Free 0.392
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.293 101.293 211.217 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.43 Å
ligand	GOL, ZN	enzyme
Gene Ontology	Chain Function Process Component A, E cytidine deaminase activity H, D
Primary reference	The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism., Shaban NM, Shi K, Lauer KV, Carpenter MA, Richards CM, Salamango D, Wang J, Lopresti MW, Banerjee S, Levin-Klein R, Brown WL, Aihara H, Harris RS, Mol Cell. 2018 Jan 4;69(1):75-86.e9. doi: 10.1016/j.molcel.2017.12.010. Epub 2017, Dec 28. PMID:29290613

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk] Biological Unit Coordinates (6bbo.pdb1.gz) 153 Kb Biological Unit Coordinates (6bbo.pdb2.gz) 155 Kb LPC: Ligand-Protein Contacts for 6BBO CSU: Contacts of Structural Units for 6BBO Structure Factors (594 Kb) Retrieve 6BBO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6BBO from S2C, [Save to disk]

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Visual 3D analysis of 6BBO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6bbo_B] [6bbo_G] [6bbo_E] [6bbo_C] [6bbo_A] [6bbo_D] [6bbo_H] [6bbo_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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