6BCG Hydrolase Dna date Oct 20, 2017
title I-Ltri A28g Bound To Cognate Substrate (Pre-Cleavage Complex
authors C.Brown, K.Zhang, T.A.Mcmurrough, G.B.Gloor, D.R.Edgell, M.Junop
compound source
Molecule: Ribosomal Protein 3homing Endonuclease-Like Fusi Protein;
Chain: D, A, G, J
Engineered: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
Gene: Heg Fusion, Rps3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (26-Mer)
Chain: E, B, H, K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483

Molecule: Dna (26-Mer)
Chain: F, C, I, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
symmetry Space Group: P 1
R_factor 0.263 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.859 65.942 169.734 89.99 90.03 90.24
method X-Ray Diffractionresolution 2.90 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


Primary referenceActive site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases., McMurrough TA, Brown CM, Zhang K, Hausner G, Junop MS, Gloor GB, Edgell DR, Nucleic Acids Res. 2018 Oct 24. pii: 5144155. doi: 10.1093/nar/gky976. PMID:30357419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (6bcg.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (6bcg.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (6bcg.pdb3.gz) 65 Kb
  • Biological Unit Coordinates (6bcg.pdb4.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 6BCG
  • CSU: Contacts of Structural Units for 6BCG
  • Structure Factors (1104 Kb)
  • Retrieve 6BCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BCG from S2C, [Save to disk]
  • View 6BCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BCG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bcg_H] [6bcg_K] [6bcg_F] [6bcg_E] [6bcg_G] [6bcg_B] [6bcg_L] [6bcg_C] [6bcg_I] [6bcg_D] [6bcg_J] [6bcg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BCG
  • Community annotation for 6BCG at PDBWiki (http://pdbwiki.org)

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