6BE6 Membrane Protein date Oct 24, 2017
title Adam10 Extracellular Domain
authors T.C.M.Seegar
compound source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 10;
Chain: A, B, C, D
Synonym: Adam 10,Cdw156,Kuzbanian Protein Homolog,Mammalian Disintegrin-Metalloprotease;
Ec: 3.4.24.81
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam10, Kuz, Madm
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 2
R_factor 0.236 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.420 188.780 86.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Hydrolase E.C.3.4.24.81 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Basis for Regulated Proteolysis by the alpha-Secretase ADAM10., Seegar TCM, Killingsworth LB, Saha N, Meyer PA, Patra D, Zimmerman B, Janes PW, Rubinstein E, Nikolov DB, Skiniotis G, Kruse AC, Blacklow SC, Cell. 2017 Dec 14;171(7):1638-1648.e7. doi: 10.1016/j.cell.2017.11.014. Epub 2017, Dec 7. PMID:29224781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (6be6.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (6be6.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (6be6.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (6be6.pdb4.gz) 77 Kb
  • CSU: Contacts of Structural Units for 6BE6
  • Structure Factors (1010 Kb)
  • Retrieve 6BE6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BE6 from S2C, [Save to disk]
  • View 6BE6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BE6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6be6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6be6_D] [6be6_A] [6be6_B] [6be6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BE6
  • Community annotation for 6BE6 at PDBWiki (http://pdbwiki.org)

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