6BJE Protein Binding date Nov 06, 2017
title Crystal Structure Of Lysophospholipase A2 Conjugated With Phenylmethylsulfonyl Fluoride
authors S.Xu
compound source
Molecule: Acyl-Protein Thioesterase 2
Chain: A, B
Synonym: Apt-2,Lysophospholipase II,Lysopla II
Ec: 3.1.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lypla2, Apt2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
symmetry Space Group: P 43 21 2
R_factor 0.221 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.769 54.769 279.619 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand PMS enzyme Hydrolase E.C.3.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLysophospholipases cooperate to mediate lipid homeostasis and lysophospholipid signaling., Wepy JA, Galligan JJ, Kingsley PJ, Xu S, Goodman MC, Tallman KA, Rouzer CA, Marnett LJ, J Lipid Res. 2019 Feb;60(2):360-374. doi: 10.1194/jlr.M087890. Epub 2018 Nov 27. PMID:30482805
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (6bje.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (6bje.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (6bje.pdb3.gz) 277 Kb
  • Biological Unit Coordinates (6bje.pdb4.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 6BJE
  • CSU: Contacts of Structural Units for 6BJE
  • Structure Factors (268 Kb)
  • Retrieve 6BJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BJE from S2C, [Save to disk]
    • View 6BJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BJE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bje_B] [6bje_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BJE
  • Community annotation for 6BJE at PDBWiki (http://pdbwiki.org)

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