6BOG Transcription date Nov 20, 2017
title Crystal Structure Of Rapa, A Swi2snf2 Protein That Recycles Polymerase During Transcription
authors G.X.Shaw, J.Gan, Y.N.Zhou, R.Zhang, A.Joachimiak, D.J.Jin, X.Ji
compound source
Molecule: Rna Polymerase-Associated Protein Rapa
Chain: A, B
Fragment: Full-Length
Synonym: Atp-Dependent Helicase Hepa
Ec: 3.6.4.-
Engineered: Yes
Organism_scientific: Escherichia Coli O45:K1
Organism_taxid: 585035
Strain: S88 Expec
Gene: Rapa, Ecs88_0062
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe80l
symmetry Space Group: P 43
R_factor 0.244 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.856 123.856 187.994 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.21 Å
ligand MSE, SO4 enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of RapA, a Swi2/Snf2 protein that recycles RNA polymerase during transcription., Shaw G, Gan J, Zhou YN, Zhi H, Subburaman P, Zhang R, Joachimiak A, Jin DJ, Ji X, Structure. 2008 Sep 10;16(9):1417-27. PMID:18786404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • Biological Unit Coordinates (6bog.pdb1.gz) 158 Kb
  • Biological Unit Coordinates (6bog.pdb2.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 6BOG
  • CSU: Contacts of Structural Units for 6BOG
  • Structure Factors (413 Kb)
  • Retrieve 6BOG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BOG from S2C, [Save to disk]
  • View 6BOG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BOG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bog_A] [6bog_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BOG
  • Community annotation for 6BOG at PDBWiki (http://pdbwiki.org)

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