6BWL Lyase date Dec 15, 2017
title X-Ray Structure Of Pal From Bacillus Thuringiensis
authors N.A.Delvaux, J.B.Thoden, H.M.Holden
compound source
Molecule: Pal
Chain: A
Synonym: Dtdp-Glucose 4,6-Dehydratase
Ec: 4.2.1.46
Engineered: Yes
Organism_scientific: Bacillus Thuringiensis Serovar Israele 35646;
Organism_taxid: 339854
Gene: Rbth_04254
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.129 R_Free 0.151
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.420 98.341 98.603 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand CL, EDO, NA, NAD, UDP enzyme Lyase E.C.4.2.1.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular Architectures of Pen and Pal: Key Enzymes Required for CMP-Pseudaminic Acid Biosynthesis in Bacillus thuringiensis., Delvaux NA, Thoden JB, Holden HM, Protein Sci. 2017 Dec 20. doi: 10.1002/pro.3368. PMID:29266550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (6bwl.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 6BWL
  • CSU: Contacts of Structural Units for 6BWL
  • Structure Factors (2284 Kb)
  • Retrieve 6BWL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BWL from S2C, [Save to disk]
  • View 6BWL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BWL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bwl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BWL
  • Community annotation for 6BWL at PDBWiki (http://pdbwiki.org)

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