6C09 Immune System date Dec 28, 2017
title Ternary Crystal Structure Of The 3c8 Tcr-Cd1c-Monoacylglycer
authors K.S.Wun, J.Rossjohn
compound source
Molecule: T-Cell Surface Glycoprotein Cd1c
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd1c
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: 3c8 T Cell Receptor Alpha-Chain
Chain: C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: 3c8 T Cell Receptor Beta-Chain
Chain: D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: P 31 2 1
R_factor 0.174 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.170 173.170 82.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
ligand D10, EDO, EKG, K, NAG, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

    • Primary referenceT cell autoreactivity directed toward CD1c itself rather than toward carried self lipids., Wun KS, Reijneveld JF, Cheng TY, Ladell K, Uldrich AP, Le Nours J, Miners KL, McLaren JE, Grant EJ, Haigh OL, Watkins TS, Suliman S, Iwany S, Jimenez J, Calderon R, Tamara KL, Leon SR, Murray MB, Mayfield JA, Altman JD, Purcell AW, Miles JJ, Godfrey DI, Gras S, Price DA, Van Rhijn I, Moody DB, Rossjohn J, Nat Immunol. 2018 Apr;19(4):397-406. doi: 10.1038/s41590-018-0065-7. Epub 2018, Mar 12. PMID:29531339
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (6c09.pdb1.gz) 265 Kb
  • LPC: Ligand-Protein Contacts for 6C09
  • CSU: Contacts of Structural Units for 6C09
  • Structure Factors (1425 Kb)
  • Retrieve 6C09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C09 from S2C, [Save to disk]
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    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c09_D] [6c09_B] [6c09_C] [6c09_A]
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