6C16	Protein Binding	date	Jan 04, 2018
title	Ubiquitin Variant (Ubv.Fbl10.1) Bound To A Human Skp1-Fbl11 Complex.
authors	N.Manczyk, F.Sicheri
compound		source
Molecule: S-Phase Kinase-Associated Protein 1 Chain: A, B Synonym: Cyclin-Acdk2-Associated Protein P19,P19a,Organ Of Protein 2,Ocp-2,Organ Of Corti Protein II,Ocp-II,Rna Polyme Elongation Factor-Like Protein,Siii,Transcription Elongatio Polypeptide 1-Like,P19skp1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Skp1, Emc19, Ocp2, Skp1a, Tceb1l Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Lysine-Specific Demethylase 2a Chain: C, F Synonym: Cxxc-Type Zinc Finger Protein 8,F-Box And Leucine- Repeat Protein 11,F-Box Protein Fbl7,F-Box Protein Lilina,F Repeat Protein 11,Jmjc Domain-Containing Histone Demethylat Protein 1a,[Histone-H3]-Lysine-36 Demethylase 1a; Ec: 1.14.11.27 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdm2a, Cxxc8, Fbl7, Fbxl11, Jhdm1a, Kiaa1004 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Polyubiquitin-B Chain: D, H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.260 R_Free 0.317
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.241 119.582 63.707 90.00 98.45 90.00
method	X-Ray Diffraction	resolution	3.27 Å
ligand		enzyme	Oxidoreductase E.C.1.14.11.27 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	A Structure-Based Strategy for Engineering Selective Ubiquitin Variant Inhibitors of Skp1-Cul1-F-Box Ubiquitin Ligases., Gorelik M, Manczyk N, Pavlenco A, Kurinov I, Sidhu SS, Sicheri F, Structure. 2018 Jun 26. pii: S0969-2126(18)30210-7. doi:, 10.1016/j.str.2018.06.004. PMID:30033217

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (6c16.pdb1.gz) 37 Kb Biological Unit Coordinates (6c16.pdb2.gz) 36 Kb CSU: Contacts of Structural Units for 6C16 Structure Factors (336 Kb) Retrieve 6C16 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6C16 from S2C, [Save to disk]

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Visual 3D analysis of 6C16

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6c16_D] [6c16_C] [6c16_H] [6c16_B] [6c16_F] [6c16_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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