6C2F	Dna Binding Protein Dna	date	Jan 08, 2018
title	Mbd2 In Complex With Methylated Dna
authors	K.Liu, C.Xu, W.Tempel, C.H.Arrowsmith, C.Bountra, A.M.Edwards, J.M Structural Genomics Consortium, Structural Genomics Consorti
compound		source
Molecule: Methyl-Cpg-Binding Domain Protein 2 Chain: A, D, G, J, M, P Synonym: Demethylase,Dmtase,Methyl-Cpg-Binding Protein Mbd2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mbd2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-V2r-Prare2 Expression_system_plasmid: Pet28-Mhl
Molecule: 12-Mer Dna Chain: B, E, H, K, N, Q Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthetic
Molecule: 12-Mer Dna Chain: C, F, I, L, O, R Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthetic
symmetry	Space Group: P 1	R_factor 0.212 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.510 40.600 202.380 90.07 93.11 119.75
method	X-Ray Diffraction	resolution	2.65 Å
ligand	5CM, UNX	enzyme
Gene Ontology	Chain Function Process Component A, J, M, D, P, G

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk] Biological Unit Coordinates (6c2f.pdb1.gz) 44 Kb Biological Unit Coordinates (6c2f.pdb2.gz) 43 Kb Biological Unit Coordinates (6c2f.pdb3.gz) 44 Kb Biological Unit Coordinates (6c2f.pdb4.gz) 42 Kb Biological Unit Coordinates (6c2f.pdb5.gz) 42 Kb Biological Unit Coordinates (6c2f.pdb6.gz) 43 Kb LPC: Ligand-Protein Contacts for 6C2F CSU: Contacts of Structural Units for 6C2F Structure Factors (3279 Kb) Retrieve 6C2F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6C2F from S2C, [Save to disk]

View 6C2F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6C2F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6c2f_L] [6c2f_R] [6c2f_O] [6c2f_H] [6c2f_J] [6c2f_M] [6c2f_D] [6c2f_A] [6c2f_P] [6c2f_N] [6c2f_Q] [6c2f_K] [6c2f_E] [6c2f_C] [6c2f_F] [6c2f_B] [6c2f_G] [6c2f_I] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6C2F

Community annotation for 6C2F at PDBWiki (http://pdbwiki.org)

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