6C66 Dna Binding Protein Dna Rna date Jan 17, 2018
title Crispr Rna-Guided Surveillance Complex, Pre-Nicking
authors Y.Xiao, M.Luo, M.Liao, A.Ke
compound source
Molecule: Crispr-Associated Helicase, Cas3 Family
Chain: G
Engineered: Yes
Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1593
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Crispr-Associated Protein, Cse1 Family
Chain: A
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1592
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Crispr-Associated Protein, Cse4 Family
Chain: B, C, D, E, F, H
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1590
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Uncharacterized Protein
Chain: I, K
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1591
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Crrna
Chain: J
Engineered: Yes

Organism_scientific: Thermobifida Fusca
Organism_taxid: 2021
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Target Strand
Chain: L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Thermobifida Fusca
Organism_taxid: 2021

Molecule: Crispr-Associated Protein, Cas5e Family
Chain: M
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1589
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nontarget Strand
Chain: N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Thermobifida Fusca
Organism_taxid: 2021

Molecule: Crispr-Associated Protein, Cse3 Family
Chain: O
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1588
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.66 Å
ligand FE enzyme
Gene
Ontology
ChainFunctionProcessComponent
G
  • nuclease activity


  • K, I


    M


    Primary referenceStructure basis for RNA-guided DNA degradation by Cascade and Cas3., Xiao Y, Luo M, Dolan AE, Liao M, Ke A, Science. 2018 Jun 7. pii: science.aat0839. doi: 10.1126/science.aat0839. PMID:29880725
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (650 Kb) [Save to disk]
  • Biological Unit Coordinates (6c66.pdb1.gz) 643 Kb
  • LPC: Ligand-Protein Contacts for 6C66
  • CSU: Contacts of Structural Units for 6C66
  • Retrieve 6C66 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C66 from S2C, [Save to disk]
  • View 6C66 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6C66
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c66_K] [6c66_A] [6c66_C] [6c66_L] [6c66_G] [6c66_H] [6c66_M] [6c66_J] [6c66_D] [6c66_F] [6c66_O] [6c66_I] [6c66_N] [6c66_E] [6c66_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C66
  • Community annotation for 6C66 at PDBWiki (http://pdbwiki.org)

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