6CFO Oxidoreductase date Feb 15, 2018
title Human Pyruvate Dehydrogenase E1 Component Complex With Coval Adduct Acetyl Phosphinate
authors P.Arjunan, M.J.Whitley, W.Furey
compound source
Molecule: Pyruvate Dehydrogenase E1 Component Subunit Alpha Form, Mitochondrial;
Chain: A, C
Synonym: Pdhe1-A Type I
Ec: 1.2.4.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdha1, Phe1a
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_taxid: 562
Expression_system_strain: Dl41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-9

Molecule: Pyruvate Dehydrogenase E1 Component Subunit Beta, Mitochondrial;
Chain: B, D
Synonym: Pdhe1-B
Ec: 1.2.4.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdhb, Phe1b
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_taxid: 562
Expression_system_strain: Dl41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-9
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.270 120.730 129.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand A5X, MG enzyme Oxidoreductase E.C.1.2.4.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B
  • pyruvate dehydrogenase (NAD+...


    • Primary referencePyruvate dehydrogenase complex deficiency is linked to regulatory loop disorder in the alphaV138M variant of human pyruvate dehydrogenase., Whitley MJ, Arjunan P, Nemeria NS, Korotchkina LG, Park YH, Patel M, Jordan F, Furey WF, J Biol Chem. 2018 Jul 3. pii: RA118.003996. doi: 10.1074/jbc.RA118.003996. PMID:29970614
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (444 Kb) [Save to disk]
  • Biological Unit Coordinates (6cfo.pdb1.gz) 437 Kb
  • LPC: Ligand-Protein Contacts for 6CFO
  • CSU: Contacts of Structural Units for 6CFO
  • Structure Factors (322 Kb)
  • Retrieve 6CFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CFO from S2C, [Save to disk]
    • View 6CFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CFO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cfo_A] [6cfo_C] [6cfo_B] [6cfo_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CFO
  • Community annotation for 6CFO at PDBWiki (http://pdbwiki.org)

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