6CIP Oxidoreductase date Feb 24, 2018
title Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoaceti Acetyl-Tpp Bound
authors P.Y.T.Chen, C.L.Drennan
compound source
Molecule: Pyruvate-Ferredoxin Oxidoreductase
Chain: A, B, C, D, E, F
Ec: 1.2.7.-
Engineered: Yes
 Organism_scientific: Moorella Thermoacetica (Strain Atcc 39 9320);
Organism_taxid: 264732
Strain: Atcc 39073 Jcm 9320
Gene: Moth_0064
Expression_system: Moorella Thermoacetica
Expression_system_taxid: 1525
symmetry Space Group: C 1 2 1
R_factor 0.187 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
342.005 108.263 240.437 90.00 109.32 90.00
method X-Ray Diffractionresolution 3.19 Å
ligand HTL, MG, SF4, SO4 enzyme Oxidoreductase E.C.1.2.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • pyruvate synthase activity


    • Primary referenceBinding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase from Moorella thermoacetica., Chen PY, Aman H, Can M, Ragsdale SW, Drennan CL, Proc Natl Acad Sci U S A. 2018 Mar 26. pii: 1722329115. doi:, 10.1073/pnas.1722329115. PMID:29581263
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2243 Kb) [Save to disk]
  • Biological Unit Coordinates (6cip.pdb1.gz) 749 Kb
  • Biological Unit Coordinates (6cip.pdb2.gz) 755 Kb
  • Biological Unit Coordinates (6cip.pdb3.gz) 753 Kb
  • LPC: Ligand-Protein Contacts for 6CIP
  • CSU: Contacts of Structural Units for 6CIP
  • Structure Factors (3822 Kb)
  • Retrieve 6CIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CIP from S2C, [Save to disk]
    • View 6CIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CIP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cip_A] [6cip_E] [6cip_C] [6cip_B] [6cip_F] [6cip_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CIP
  • Community annotation for 6CIP at PDBWiki (http://pdbwiki.org)

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