6CO1 Protein Binding date Mar 10, 2018
title Structure Of Human Tirr In Complex With 53bp1 Tudor Domains
authors G.Cui, M.V.Botuyan, G.Mer
compound source
Molecule: Tudor-Interacting Repair Regulator Protein
Chain: A, B, C, D
Synonym: Nudt16-Like Protein 1,Protein Syndesmos
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt16l1, Sdos, Tirr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbb75

Molecule: Tp53-Binding Protein 1
Chain: E, F
Synonym: P53bp1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tp53bp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptev
symmetry Space Group: P 1
R_factor 0.164 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.840 77.030 77.240 85.24 86.07 86.09
method X-Ray Diffractionresolution 2.18 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nucleotide phosphatase activ...
  • phosphodiesterase decapping ...


  • Primary referenceMechanism of 53BP1 activity regulation by RNA-binding TIRR and a designer protein., Botuyan MV, Cui G, Drane P, Oliveira C, Detappe A, Brault ME, Parnandi N, Chaubey S, Thompson JR, Bragantini B, Zhao D, Chapman JR, Chowdhury D, Mer G, Nat Struct Mol Biol. 2018 Jul 2. pii: 10.1038/s41594-018-0083-z. doi:, 10.1038/s41594-018-0083-z. PMID:29967538
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (551 Kb) [Save to disk]
  • Biological Unit Coordinates (6co1.pdb1.gz) 271 Kb
  • Biological Unit Coordinates (6co1.pdb2.gz) 272 Kb
  • CSU: Contacts of Structural Units for 6CO1
  • Structure Factors (1526 Kb)
  • Retrieve 6CO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CO1 from S2C, [Save to disk]
  • View 6CO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CO1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6co1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6co1_E] [6co1_F] [6co1_C] [6co1_A] [6co1_D] [6co1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CO1
  • Community annotation for 6CO1 at PDBWiki (http://pdbwiki.org)

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