6D24 Oxidoreductase date Apr 12, 2018
title Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex With
authors H.Botti, C.Ortiz, M.A.Comini, N.Larrieux, A.Buschiazzo
compound source
Molecule: Glucose-6-Phosphate 1-Dehydrogenase
Chain: A, B
Ec: 1.1.1.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Trypanosoma Cruzi
Organism_taxid: 5693
Gene: G6pdh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glucose-6-Phosphate 1-Dehydrogenase
Chain: C, D
Ec: 1.1.1.49
Engineered: Yes
Mutation: Yes
Other_details: Cys528 Oxidized To Cso

Organism_scientific: Trypanosoma Cruzi
Organism_taxid: 5693
Gene: G6pdh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.790 133.030 107.750 90.00 100.27 90.00
method X-Ray Diffractionresolution 3.35 Å
ligand BG6, CL, CSO, GOL, SO4 enzyme Oxidoreductase E.C.1.1.1.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceGlucose-6-Phosphate Dehydrogenase from the Human Pathogen Trypanosoma cruzi Evolved Unique Structural Features to Support Efficient Product Formation., Ortiz C, Botti H, Buschiazzo A, Comini MA, J Mol Biol. 2019 Mar 28. pii: S0022-2836(18)30691-0. doi:, 10.1016/j.jmb.2019.03.023. PMID:30930048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (663 Kb) [Save to disk]
  • Biological Unit Coordinates (6d24.pdb1.gz) 654 Kb
  • LPC: Ligand-Protein Contacts for 6D24
  • CSU: Contacts of Structural Units for 6D24
  • Structure Factors (1311 Kb)
  • Retrieve 6D24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D24 from S2C, [Save to disk]
  • View 6D24 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6D24
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d24_D] [6d24_B] [6d24_A] [6d24_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6D24
  • Community annotation for 6D24 at PDBWiki (http://pdbwiki.org)

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