6D3A Hydrolase date Apr 15, 2018
title Structure Of Human Arh3 D314e Bound To Adp-Ribose And Magnes
authors Y.Pourfarjam, J.Ventura, I.Kurinov, I.K.Kim
compound source
Molecule: Poly(Adp-Ribose) Glycohydrolase Arh3
Chain: C, D, A, B
Synonym: Adp-Ribosylhydrolase 3,[Protein Adp-Ribosylarginin Hydrolase-Like Protein 2;
Ec: 3.2.1.143
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adprhl2, Arh3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.167 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.901 72.229 115.906 83.01 85.73 72.43
method X-Ray Diffractionresolution 1.60 Å
ligand AR6, MG enzyme Hydrolase E.C.3.2.1.143 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (627 Kb) [Save to disk]
  • Biological Unit Coordinates (6d3a.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (6d3a.pdb2.gz) 157 Kb
  • Biological Unit Coordinates (6d3a.pdb3.gz) 161 Kb
  • Biological Unit Coordinates (6d3a.pdb4.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 6D3A
  • CSU: Contacts of Structural Units for 6D3A
  • Structure Factors (6960 Kb)
  • Retrieve 6D3A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D3A from S2C, [Save to disk]
    • View 6D3A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6D3A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d3a_B] [6d3a_A] [6d3a_D] [6d3a_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6D3A
  • Community annotation for 6D3A at PDBWiki (http://pdbwiki.org)

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