6D3K Transferase date Apr 16, 2018
title Crystal Structure Of Unphosphorylated Human Pkr Kinase Domai Complex With Adp
authors H.Erlandsen, C.B.Mayo, V.L.Robinson, J.L.Cole
compound source
Molecule: Interferon-Induced, Double-Stranded Rna-Activated Kinase;
Chain: B, A, C
Fragment: Kinase Domain (229-551)
Synonym: Eukaryotic Translation Initiation Factor 2-Alpha K Eif-2a Protein Kinase 2, Interferon-Inducible Rna-Dependent Kinase, P1eif-2a Protein Kinase, Protein Kinase Rna-Activa Protein Kinase R, Tyrosine-Protein Kinase Eif2ak2, P68 Kina
Ec: 2.7.11.1,2.7.10.2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif2ak2, Pkr, Prkr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.480 159.600 172.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ADP, MG, PO4, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (6d3k.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (6d3k.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 6D3K
  • CSU: Contacts of Structural Units for 6D3K
  • Structure Factors (1614 Kb)
  • Retrieve 6D3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D3K from S2C, [Save to disk]
    • View 6D3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6D3K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d3k_A] [6d3k_B] [6d3k_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6D3K
  • Community annotation for 6D3K at PDBWiki (http://pdbwiki.org)

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