6D5J	Signaling Protein	date	Apr 19, 2018
title	Ras:Sos:Ras In Complex With A Small Molecule Activator
authors	J.Phan, T.Hodges, S.W.Fesik
compound		source
Molecule: Gtpase Hras Chain: A Synonym: H-Ras-1,Ha-Ras,Transforming Protein P21,C-H-Ras,P2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hras, Hras1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Son Of Sevenless Homolog 1 Chain: B Synonym: Sos-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sos1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Gtpase Hras Chain: C Synonym: H-Ras-1,Ha-Ras,Transforming Protein P21,C-H-Ras,P2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hras, Hras1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 4 2 2	R_factor 0.157 R_Free 0.175
crystal cell	length a length b length c angle alpha angle beta angle gamma 183.627 183.627 179.056 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	CSO, FMT, FV4, GNP, GOL, MG, NA	enzyme
Gene Ontology	Chain Function Process Component A, C B
Primary reference	Discovery and Structure-Based Optimization of Benzimidazole-Derived Activators of SOS1-Mediated Nucleotide Exchange on RAS., Hodges TR, Abbott JR, Little AJ, Sarkar D, Salovich JM, Howes J, Akan DT, Sai J, Arnold AL, Browning C, Burns MC, Sobolik T, Sun Q, Beesetty Y, Coker J, Scharn D, Stadtmueller H, Rossanese OW, Phan J, Waterson AG, McConnell DB, Fesik SW, J Med Chem. 2018 Sep 11. doi: 10.1021/acs.jmedchem.8b01108. PMID:30205005

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk] Biological Unit Coordinates (6d5j.pdb1.gz) 302 Kb LPC: Ligand-Protein Contacts for 6D5J CSU: Contacts of Structural Units for 6D5J Structure Factors (3992 Kb) Retrieve 6D5J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6D5J from S2C, [Save to disk]

View 6D5J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6D5J

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d5j_A] [6d5j_B] [6d5j_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6D5J

Community annotation for 6D5J at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---