6D6I Transferase date Apr 21, 2018
title Ube2v1 In Complex With Ubiquitin Variant Ubv.V1.1 And Ube2n
authors D.F.Ceccarelli, P.Garg, A.Keszei, S.Sidhu, F.Sicheri
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 Variant 1
Chain: A, D
Synonym: Uev-1,Croc-1,Traf6-Regulated Ikk Activator 1 Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2v1, Croc1, Ube2v, Uev1, Pokcl.19
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Ubiquitin-Conjugating Enzyme E2 N
Chain: B, E
Synonym: Bendless-Like Ubiquitin-Conjugating Enzyme,E2 Ubiq Conjugating Enzyme N,Ubc13,Ubch13,Ubiquitin Carrier Protein Ubiquitin-Protein Ligase N;
Ec: 2.3.2.23
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2n, Blu
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28

Molecule: Ubv.V1.1
Chain: C, F
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uba52
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Proex
symmetry Space Group: P 32
R_factor 0.264 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.444 91.444 92.446 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.55 Å
ligand
enzyme Transferase E.C.2.3.2.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (6d6i.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (6d6i.pdb2.gz) 157 Kb
  • CSU: Contacts of Structural Units for 6D6I
  • Structure Factors (388 Kb)
  • Retrieve 6D6I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D6I from S2C, [Save to disk]
  • View 6D6I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6D6I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d6i_A] [6d6i_D] [6d6i_E] [6d6i_B] [6d6i_C] [6d6i_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6D6I
  • Community annotation for 6D6I at PDBWiki (http://pdbwiki.org)

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