6D83 Protein Transport date Apr 25, 2018
title Structure Of The Cargo Bound Ap-1:Arf1:Tetherin-Nef (L164a, Dileucine Mutant Dimer Monomeric Subunit
authors C.Z.Buffalo, K.L.Morris, J.H.Hurley
compound source
Molecule: Bone Marrow Stromal Antigen 2,Protein Nef
Chain: T, L
Fragment: Tetherin Unp Residues 2-21, Nef Unp Residues 1-20
Synonym: Bst-2,Hm1.24 Antigen,Tetherin,3'Orf,Negative Facto Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Human Immunodeficiency V
Organism_common: Human
Organism_taxid: 9606, 11676
Gene: Bst2, Nef
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Beta-1
Chain: B
Synonym: Adaptor Protein Complex Ap-1 Subunit Beta-1,Adapto Protein Complex 1 Subunit Beta-1,Beta-1-Adaptin,Beta-Adapti Clathrin Assembly Protein Complex 1 Beta Large Chain,Golgi Ha1ap1 Adaptin Beta Subunit;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ap1b1, Adtb1, Bam22, Clapb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Adp-Ribosylation Factor 1
Chain: C, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Gamma-1
Chain: G
Synonym: Adaptor Protein Complex Ap-1 Subunit Gamma-1,Adapt Protein Complex 1 Subunit Gamma-1,Clathrin Assembly Protein Gamma-1 Large Chain,Gamma-Adaptin,Gamma1-Adaptin,Golgi Adap Ha1ap1 Adaptin Subunit Gamma-1;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ap1g1, Adtg, Clapg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Mu-1
Chain: M
Synonym: Ap-Mu Chain Family Member Mu1a,Adaptor Protein Com Subunit Mu-1,Adaptor-Related Protein Complex 1 Subunit Mu-1 Assembly Protein Complex 1 Mu-1 Medium Chain 1,Clathrin Coa Protein Ap47,Clathrin Coat-Associated Protein Ap47,Golgi Ad Ha1ap1 Adaptin Mu-1 Subunit,Mu-Adaptin 1,Mu1a-Adaptin;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ap1m1, Cltnm
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Complex Subunit Sigma-3
Chain: S
Synonym: Adaptor Protein Complex Ap-1 Subunit Sigma-1c,Adap Related Protein Complex 1 Subunit Sigma-1c,Clathrin Assembl Complex 1 Sigma-1c Small Chain,Golgi Adaptor Ha1ap1 Adapti Subunit,Sigma 1c Subunit Of Ap-1 Clathrin,Sigma-Adaptin 1c, Adaptin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ap1s3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.27 Å
Gene
Ontology
ChainFunctionProcessComponent
B


G


H, C
  • phospholipase D activator ac...


  • M


    S


    T, L


    Primary referenceHIV-1 Nefs Are Cargo-Sensitive AP-1 Trimerization Switches in Tetherin Downregulation., Morris KL, Buffalo CZ, Sturzel CM, Heusinger E, Kirchhoff F, Ren X, Hurley JH, Cell. 2018 Jul 26;174(3):659-671.e14. doi: 10.1016/j.cell.2018.07.004. PMID:30053425
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk]
  • Biological Unit Coordinates (6d83.pdb1.gz) 299 Kb
  • CSU: Contacts of Structural Units for 6D83
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  • Fold representative 6d83 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d83_G] [6d83_T] [6d83_S] [6d83_M] [6d83_H] [6d83_L] [6d83_C] [6d83_B]
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