6D85 Signaling Protein date Apr 25, 2018
title Structure Of The Bovine P85a Bh Domain E217k Mutant
authors S.A.Moore, J.D.Marshall, D.H.Anderson
compound source
Molecule: Phosphatidylinositol 3-Kinase Regulatory Subunit
Chain: B, A
Fragment: Residues 110-302
Synonym: Ptdins-3-Kinase Regulatory Subunit Alpha, Phosphatidylinositol 3-Kinase 85 Kda Regulatory Subunit Alp 3-Kinase Regulatory Subunit P85-Alpha;
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Pik3r1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p3
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.474 91.647 93.556 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CSO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePatient-derived mutations within the N-terminal domains of p85alpha impact PTEN or Rab5 binding and regulation., Mellor P, Marshall JDS, Ruan X, Whitecross DE, Ross RL, Knowles MA, Moore SA, Anderson DH, Sci Rep. 2018 May 8;8(1):7108. doi: 10.1038/s41598-018-25487-5. PMID:29740032
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (6d85.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (6d85.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (6d85.pdb3.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 6D85
  • CSU: Contacts of Structural Units for 6D85
  • Structure Factors (472 Kb)
  • Retrieve 6D85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D85 from S2C, [Save to disk]
  • View 6D85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6D85
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d85_A] [6d85_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6D85
  • Community annotation for 6D85 at PDBWiki (http://pdbwiki.org)

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