6D8Z Signaling Protein date Apr 27, 2018
title Crystal Structure Of The C-Terminal Guanine Nucleotide Excha Module Of Human Trio
authors S.Bandekar, J.J.Tesmer
compound source
Molecule: Triple Functional Domain Protein
Chain: A, B, C
Fragment: Unp Residues 1960-2275
Synonym: Ptprf-Interacting Protein
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trio
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_variant: 1960-2275
Expression_system_plasmid: Pmalc2h10t
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.181 95.787 182.431 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of the C-terminal guanine nucleotide exchange factor module of Trio in an autoinhibited conformation reveals its oncogenic potential., Bandekar SJ, Arang N, Tully ES, Tang BA, Barton BL, Li S, Gutkind JS, Tesmer JJG, Sci Signal. 2019 Feb 19;12(569). pii: 12/569/eaav2449. doi:, 10.1126/scisignal.aav2449. PMID:30783010
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (6d8z.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (6d8z.pdb2.gz) 108 Kb
  • Biological Unit Coordinates (6d8z.pdb3.gz) 106 Kb
  • CSU: Contacts of Structural Units for 6D8Z
  • Structure Factors (1071 Kb)
  • Retrieve 6D8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D8Z from S2C, [Save to disk]
  • View 6D8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6D8Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d8z_A] [6d8z_B] [6d8z_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6D8Z
  • Community annotation for 6D8Z at PDBWiki (http://pdbwiki.org)

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