6D97 Oxidoreductase date Apr 27, 2018
title Structure Of Aldehyde Dehydrogenase 12 (Aldh12) From Zea May
authors J.J.Tanner, D.A.Korasick, D.Kopecny
compound source
Molecule: Aldehyde Dehydrogenase 12
Chain: A, B, C, D
Ec: 1.2.1.88
Engineered: Yes
Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577
Gene: Aldh12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.165 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.642 123.737 103.707 90.00 105.62 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand NAD enzyme Oxidoreductase E.C.1.2.1.88 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural and Biochemical Characterization of Aldehyde Dehydrogenase 12, the Last Enzyme of Proline Catabolism in Plants., Korasick DA, Koncitikova R, Kopecna M, Hajkova E, Vigouroux A, Morera S, Becker DF, Sebela M, Tanner JJ, Kopecny D, J Mol Biol. 2018 Dec 21. pii: S0022-2836(18)31047-7. doi:, 10.1016/j.jmb.2018.12.010. PMID:30580036
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (684 Kb) [Save to disk]
  • Biological Unit Coordinates (6d97.pdb1.gz) 678 Kb
  • Biological Unit Coordinates (6d97.pdb2.gz) 342 Kb
  • Biological Unit Coordinates (6d97.pdb3.gz) 676 Kb
  • Biological Unit Coordinates (6d97.pdb4.gz) 341 Kb
  • LPC: Ligand-Protein Contacts for 6D97
  • CSU: Contacts of Structural Units for 6D97
  • Structure Factors (769 Kb)
  • Retrieve 6D97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D97 from S2C, [Save to disk]
  • View 6D97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6D97
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d97_D] [6d97_C] [6d97_A] [6d97_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6D97
  • Community annotation for 6D97 at PDBWiki (http://pdbwiki.org)

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