6DC0 Signaling Protein date May 03, 2018
title Tribbles (Trib1) Pseudokinase Fused To Ccaat-Enhancer Bindin (Cebpalpha) Degron
authors S.A.Jamieson, J.L.Brewster, P.D.Mace
compound source
Molecule: Tribbles Homolog 1,Ccaatenhancer-Binding Protein
Chain: A, B
Synonym: Trb-1,G-Protein-Coupled Receptor-Induced Gene 2 Pr 2,Skip1,Cebp Alpha;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trib1, C8fw, Gig2, Trb1, Cebpa, Cebp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 61 2 2
R_factor 0.220 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.809 98.809 332.705 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSubstrate binding allosterically relieves autoinhibition of the pseudokinase TRIB1., Jamieson SA, Ruan Z, Burgess AE, Curry JR, McMillan HD, Brewster JL, Dunbier AK, Axtman AD, Kannan N, Mace PD, Sci Signal. 2018 Sep 25;11(549). pii: 11/549/eaau0597. doi:, 10.1126/scisignal.aau0597. PMID:30254053
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (6dc0.pdb1.gz) 188 Kb
  • CSU: Contacts of Structural Units for 6DC0
  • Structure Factors (1020 Kb)
  • Retrieve 6DC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DC0 from S2C, [Save to disk]
  • View 6DC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DC0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dc0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dc0_A] [6dc0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DC0
  • Community annotation for 6DC0 at PDBWiki (http://pdbwiki.org)

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